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cyto-dl 0.4.0 documentation

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cyto-dl 0.4.0 documentation

Contents:

Home
Installation
Modifying the Example Configs
Using the API
Package modules
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- cyto_dl package
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  - cyto_dl.api package
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    - cyto_dl.api.cyto_dl_model package
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      - cyto_dl.api.cyto_dl_model.cyto_dl_base_model module
      - cyto_dl.api.cyto_dl_model.segmentation_plugin_model module
    - cyto_dl.api.data module
    - cyto_dl.api.model module
  - cyto_dl.callbacks package
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  - cyto_dl.dataframe package
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    - cyto_dl.dataframe.transforms package
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    - cyto_dl.dataframe.readers module
  - cyto_dl.datamodules package
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  - cyto_dl.image package
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    - cyto_dl.image.io package
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    - cyto_dl.image.transforms package
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  - cyto_dl.loggers package
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    - cyto_dl.loggers.mlflow module
  - cyto_dl.models package
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    - cyto_dl.models.classification package
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      - cyto_dl.models.classification.classification module
      - cyto_dl.models.classification.timepoint_classification module
    - cyto_dl.models.contrastive package
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      - cyto_dl.models.contrastive.contrastive module
    - cyto_dl.models.handlers package
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    - cyto_dl.models.im2im package
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      - cyto_dl.models.im2im.utils package
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        cyto_dl.models.im2im.utils.postprocessing package
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        cyto_dl.models.im2im.utils.postprocessing.act_thresh_label module
        
        cyto_dl.models.im2im.utils.postprocessing.auto_thresh module
        
        cyto_dl.models.im2im.utils.postprocessing.dict_to_im module
        
        cyto_dl.models.im2im.utils.instance_seg module
        
        cyto_dl.models.im2im.utils.noise_annealer module
      - cyto_dl.models.im2im.gan module
      - cyto_dl.models.im2im.multi_task module
    - cyto_dl.models.jepa package
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    - cyto_dl.models.utils package
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      - cyto_dl.models.utils.mlflow module
      - cyto_dl.models.utils.utils module
    - cyto_dl.models.vae package
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    - cyto_dl.models.base_model module
    - cyto_dl.models.basic_model module
  - cyto_dl.nn package
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    - cyto_dl.nn.discriminators package
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      - cyto_dl.nn.discriminators.multi_scale_discriminator module
      - cyto_dl.nn.discriminators.n_layer_discriminator module
    - cyto_dl.nn.head package
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    - cyto_dl.nn.losses package
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    - cyto_dl.nn.point_cloud package
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    - cyto_dl.nn.vits package
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    - cyto_dl.nn.hr_skip module
    - cyto_dl.nn.mlp module
    - cyto_dl.nn.res_unit module
    - cyto_dl.nn.spatial_transformer module
    - cyto_dl.nn.track_sequence_predictor module
  - cyto_dl.point_cloud package
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    - cyto_dl.point_cloud.io package
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      - cyto_dl.point_cloud.io.read_pcloud module
  - cyto_dl.utils package
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  - cyto_dl.compile module
  - cyto_dl.eval module
  - cyto_dl.train module

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cyto_dl.utils.spharm.reconstruction module#

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