aicsimageio
3.3.7
Contents:
Overview
Installation
Stable release
From sources
Package modules
aicsimageio package
Subpackages
aicsimageio.readers package
aicsimageio.vendor package
aicsimageio.writers package
Submodules
aicsimageio.aics_image module
aicsimageio.buffer_reader module
aicsimageio.constants module
aicsimageio.dask_utils module
aicsimageio.exceptions module
aicsimageio.transforms module
aicsimageio.types module
Module contents
Benchmarks
Results
Configs
Discussion
Historical Benchmarks
Running the Tests
Contributing
Get Started!
Deploying
Changelog
(unreleased)
Fix
Other
v3.3.7 (2021-05-31)
Fix
v3.3.6 (2021-05-24)
v3.3.5 (2021-01-25)
Fix
v3.3.4 (2021-01-13)
v3.3.3 (2020-12-14)
Fix
Other
v3.3.2 (2020-11-17)
v3.3.1 (2020-09-23)
Fix
Other
v3.3.0 (2020-09-09)
New
v3.2.3 (2020-06-23)
New
v3.2.2 (2020-06-11)
New
Other
v3.2.1 (2020-05-26)
Fix
v3.2.0 (2020-05-13)
New
Fix
Other
v3.1.4 (2020-03-21)
New
Fix
v3.1.3 (2020-03-11)
Fix
Other
v3.1.2 (2020-03-06)
New
Other
v3.1.1 (2020-02-21)
Fix
Other
v3.1.0 (2020-02-03)
New
Fix
v3.0.7 (2019-11-05)
v3.0.6 (2019-10-31)
New
Fix
v3.0.5 (2019-10-30)
v3.0.4 (2019-10-28)
v3.0.3 (2019-10-25)
Fix
Other
v3.0.2 (2019-10-11)
v3.0.1 (2019-10-04)
aicsimageio
Index
Index
A
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B
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C
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D
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E
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F
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G
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H
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I
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K
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L
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M
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N
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O
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P
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Q
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R
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S
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T
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U
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V
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W
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X
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Z
A
AcquisitionDate() (aicsimageio.vendor.omexml.OMEXML.Image property)
add_original_metadata() (aicsimageio.vendor.omexml.OMEXML.StructuredAnnotations method)
AICSImage (class in aicsimageio.aics_image)
aicsimageio (module)
aicsimageio.aics_image (module)
aicsimageio.buffer_reader (module)
aicsimageio.constants (module)
aicsimageio.dask_utils (module)
aicsimageio.exceptions (module)
aicsimageio.readers (module)
aicsimageio.readers.arraylike_reader (module)
aicsimageio.readers.czi_reader (module)
aicsimageio.readers.default_reader (module)
aicsimageio.readers.lif_reader (module)
aicsimageio.readers.ome_tiff_reader (module)
aicsimageio.readers.reader (module)
aicsimageio.readers.tiff_reader (module)
aicsimageio.transforms (module)
aicsimageio.types (module)
aicsimageio.vendor (module)
aicsimageio.vendor.omexml (module)
aicsimageio.writers (module)
aicsimageio.writers.ome_tiff_writer (module)
aicsimageio.writers.png_writer (module)
aicsimageio.writers.writer (module)
append_channel() (aicsimageio.vendor.omexml.OMEXML.Pixels method)
ArrayLikeReader (class in aicsimageio.readers.arraylike_reader)
B
BufferReader (class in aicsimageio.buffer_reader)
C
Channel (aicsimageio.constants.Dimensions attribute)
Channel() (aicsimageio.vendor.omexml.OMEXML.Pixels method)
channel_count() (aicsimageio.vendor.omexml.OMEXML.Pixels property)
client() (aicsimageio.aics_image.AICSImage property)
(aicsimageio.readers.reader.Reader property)
close() (aicsimageio.aics_image.AICSImage method)
(aicsimageio.readers.reader.Reader method)
(aicsimageio.writers.ome_tiff_writer.OmeTiffWriter method)
(aicsimageio.writers.png_writer.PngWriter method)
(aicsimageio.writers.writer.Writer method)
cluster() (aicsimageio.aics_image.AICSImage property)
(aicsimageio.readers.reader.Reader property)
cluster_and_client() (in module aicsimageio.dask_utils)
Color() (aicsimageio.vendor.omexml.OMEXML.Channel property)
Column() (aicsimageio.vendor.omexml.OMEXML.Well property)
ColumnNamingConvention() (aicsimageio.vendor.omexml.OMEXML.Plate property)
Columns() (aicsimageio.vendor.omexml.OMEXML.Plate property)
ConflictingArgumentsError
CziReader (class in aicsimageio.readers.czi_reader)
D
dask_data() (aicsimageio.aics_image.AICSImage property)
(aicsimageio.readers.reader.Reader property)
data (aicsimageio.types.LoadResults attribute)
data() (aicsimageio.aics_image.AICSImage property)
(aicsimageio.readers.reader.Reader property)
DefaultOrder (aicsimageio.constants.Dimensions attribute)
DefaultOrderList (aicsimageio.constants.Dimensions attribute)
DefaultReader (class in aicsimageio.readers.default_reader)
DeltaT() (aicsimageio.vendor.omexml.OMEXML.Plane property)
Description() (aicsimageio.vendor.omexml.OMEXML.Plate property)
determine_reader() (aicsimageio.aics_image.AICSImage static method)
DimensionOrder() (aicsimageio.vendor.omexml.OMEXML.Pixels property)
Dimensions (class in aicsimageio.constants)
dims (aicsimageio.types.LoadResults attribute)
dims() (aicsimageio.readers.arraylike_reader.ArrayLikeReader property)
(aicsimageio.readers.czi_reader.CziReader property)
(aicsimageio.readers.default_reader.DefaultReader property)
(aicsimageio.readers.lif_reader.LifReader property)
(aicsimageio.readers.reader.Reader property)
(aicsimageio.readers.tiff_reader.TiffReader property)
DO_XYTZC (in module aicsimageio.vendor.omexml)
dtype() (aicsimageio.readers.czi_reader.CziReader method)
(aicsimageio.readers.lif_reader.LifReader method)
(aicsimageio.readers.tiff_reader.TiffReader method)
E
ExposureTime() (aicsimageio.vendor.omexml.OMEXML.Plane property)
ExternalDescription() (aicsimageio.vendor.omexml.OMEXML.Well property)
ExternalIdentifier() (aicsimageio.vendor.omexml.OMEXML.Plate property)
(aicsimageio.vendor.omexml.OMEXML.Well property)
F
FirstC() (aicsimageio.vendor.omexml.OMEXML.TiffData property)
FirstT() (aicsimageio.vendor.omexml.OMEXML.TiffData property)
FirstZ() (aicsimageio.vendor.omexml.OMEXML.TiffData property)
G
get_AcquisitionDate() (aicsimageio.vendor.omexml.OMEXML.Image method)
get_channel_count() (aicsimageio.vendor.omexml.OMEXML.Pixels method)
get_channel_names() (aicsimageio.aics_image.AICSImage method)
(aicsimageio.readers.czi_reader.CziReader method)
(aicsimageio.readers.default_reader.DefaultReader method)
(aicsimageio.readers.lif_reader.LifReader method)
(aicsimageio.readers.ome_tiff_reader.OmeTiffReader method)
(aicsimageio.readers.reader.Reader method)
(aicsimageio.vendor.omexml.OMEXML.Pixels method)
get_Color() (aicsimageio.vendor.omexml.OMEXML.Channel method)
(aicsimageio.vendor.omexml.OMEXML.Well method)
get_Column() (aicsimageio.vendor.omexml.OMEXML.Well method)
get_ColumnNamingConvention() (aicsimageio.vendor.omexml.OMEXML.Plate method)
get_Columns() (aicsimageio.vendor.omexml.OMEXML.Plate method)
get_DeltaT() (aicsimageio.vendor.omexml.OMEXML.Plane method)
get_Description() (aicsimageio.vendor.omexml.OMEXML.Plate method)
get_DimensionOrder() (aicsimageio.vendor.omexml.OMEXML.Pixels method)
get_ExternalDescription() (aicsimageio.vendor.omexml.OMEXML.Well method)
get_ExternalIdentifier() (aicsimageio.vendor.omexml.OMEXML.Plate method)
(aicsimageio.vendor.omexml.OMEXML.Well method)
get_FirstC() (aicsimageio.vendor.omexml.OMEXML.TiffData method)
get_FirstT() (aicsimageio.vendor.omexml.OMEXML.TiffData method)
get_FirstZ() (aicsimageio.vendor.omexml.OMEXML.TiffData method)
get_float_attr() (in module aicsimageio.vendor.omexml)
get_ID() (aicsimageio.vendor.omexml.OMEXML.Channel method)
(aicsimageio.vendor.omexml.OMEXML.Image method)
(aicsimageio.vendor.omexml.OMEXML.Pixels method)
(aicsimageio.vendor.omexml.OMEXML.Plate method)
(aicsimageio.vendor.omexml.OMEXML.Well method)
(aicsimageio.vendor.omexml.OMEXML.WellSample method)
get_IFD() (aicsimageio.vendor.omexml.OMEXML.TiffData method)
get_image_count() (aicsimageio.vendor.omexml.OMEXML method)
get_image_dask_data() (aicsimageio.aics_image.AICSImage method)
(aicsimageio.readers.reader.Reader method)
get_image_data() (aicsimageio.aics_image.AICSImage method)
(aicsimageio.readers.reader.Reader method)
get_image_description() (aicsimageio.readers.tiff_reader.TiffReader static method)
get_ImageRef() (aicsimageio.vendor.omexml.OMEXML.WellSample method)
get_Index() (aicsimageio.vendor.omexml.OMEXML.WellSample method)
get_int_attr() (in module aicsimageio.vendor.omexml)
get_Name() (aicsimageio.vendor.omexml.OMEXML.Channel method)
(aicsimageio.vendor.omexml.OMEXML.Image method)
(aicsimageio.vendor.omexml.OMEXML.Plate method)
get_namespaces() (in module aicsimageio.vendor.omexml)
get_ns() (aicsimageio.vendor.omexml.OMEXML method)
get_original_metadata_refs() (aicsimageio.vendor.omexml.OMEXML.StructuredAnnotations method)
get_original_metadata_value() (aicsimageio.vendor.omexml.OMEXML.StructuredAnnotations method)
get_physical_pixel_size() (aicsimageio.aics_image.AICSImage method)
(aicsimageio.readers.czi_reader.CziReader method)
(aicsimageio.readers.lif_reader.LifReader method)
(aicsimageio.readers.ome_tiff_reader.OmeTiffReader method)
(aicsimageio.readers.reader.Reader method)
get_PhysicalSizeX() (aicsimageio.vendor.omexml.OMEXML.Pixels method)
get_PhysicalSizeY() (aicsimageio.vendor.omexml.OMEXML.Pixels method)
get_PhysicalSizeZ() (aicsimageio.vendor.omexml.OMEXML.Pixels method)
get_pixel_type() (aicsimageio.readers.lif_reader.LifReader static method)
(in module aicsimageio.vendor.omexml)
get_PixelType() (aicsimageio.vendor.omexml.OMEXML.Pixels method)
get_plane_count() (aicsimageio.vendor.omexml.OMEXML.Pixels method)
get_PlaneCount() (aicsimageio.vendor.omexml.OMEXML.TiffData method)
get_planes_of_channel() (aicsimageio.vendor.omexml.OMEXML.Pixels method)
get_PositionX() (aicsimageio.vendor.omexml.OMEXML.Plane method)
(aicsimageio.vendor.omexml.OMEXML.WellSample method)
get_PositionY() (aicsimageio.vendor.omexml.OMEXML.Plane method)
(aicsimageio.vendor.omexml.OMEXML.WellSample method)
get_PositionZ() (aicsimageio.vendor.omexml.OMEXML.Plane method)
get_Row() (aicsimageio.vendor.omexml.OMEXML.Well method)
get_RowNamingConvention() (aicsimageio.vendor.omexml.OMEXML.Plate method)
get_Rows() (aicsimageio.vendor.omexml.OMEXML.Plate method)
get_Sample() (aicsimageio.vendor.omexml.OMEXML.Well method)
get_SamplesPerPixel() (aicsimageio.vendor.omexml.OMEXML.Channel method)
get_SizeC() (aicsimageio.vendor.omexml.OMEXML.Pixels method)
get_SizeT() (aicsimageio.vendor.omexml.OMEXML.Pixels method)
get_SizeX() (aicsimageio.vendor.omexml.OMEXML.Pixels method)
get_SizeY() (aicsimageio.vendor.omexml.OMEXML.Pixels method)
get_SizeZ() (aicsimageio.vendor.omexml.OMEXML.Pixels method)
get_Status() (aicsimageio.vendor.omexml.OMEXML.Plate method)
get_text() (in module aicsimageio.vendor.omexml)
get_TheC() (aicsimageio.vendor.omexml.OMEXML.Plane method)
get_TheT() (aicsimageio.vendor.omexml.OMEXML.Plane method)
get_TheZ() (aicsimageio.vendor.omexml.OMEXML.Plane method)
get_Timepoint() (aicsimageio.vendor.omexml.OMEXML.WellSample method)
get_Well() (aicsimageio.vendor.omexml.OMEXML.Plate method)
get_well_name() (aicsimageio.vendor.omexml.OMEXML.Plate method)
get_WellOriginX() (aicsimageio.vendor.omexml.OMEXML.Plate method)
get_WellOriginY() (aicsimageio.vendor.omexml.OMEXML.Plate method)
guess_dim_order() (aicsimageio.readers.reader.Reader static method)
H
has_key() (aicsimageio.vendor.omexml.OMEXML.OriginalMetadata method)
(aicsimageio.vendor.omexml.OMEXML.StructuredAnnotations method)
has_original_metadata() (aicsimageio.vendor.omexml.OMEXML.StructuredAnnotations method)
I
ID() (aicsimageio.vendor.omexml.OMEXML.Channel property)
(aicsimageio.vendor.omexml.OMEXML.Image property)
(aicsimageio.vendor.omexml.OMEXML.Pixels property)
(aicsimageio.vendor.omexml.OMEXML.Plate property)
(aicsimageio.vendor.omexml.OMEXML.Well property)
(aicsimageio.vendor.omexml.OMEXML.WellSample property)
IFD() (aicsimageio.vendor.omexml.OMEXML.TiffData property)
image() (aicsimageio.vendor.omexml.OMEXML method)
image_count() (aicsimageio.vendor.omexml.OMEXML property)
ImageRef() (aicsimageio.vendor.omexml.OMEXML.WellSample property)
imread() (in module aicsimageio.aics_image)
imread_dask() (in module aicsimageio.aics_image)
InconsistentPixelType
InconsistentShapeError
Index() (aicsimageio.vendor.omexml.OMEXML.WellSample property)
INTEL_ENDIAN (aicsimageio.buffer_reader.BufferReader attribute)
InvalidDimensionOrderingError
is_ome() (aicsimageio.readers.ome_tiff_reader.OmeTiffReader method)
is_this_type() (aicsimageio.readers.reader.Reader class method)
iter_original_metadata() (aicsimageio.vendor.omexml.OMEXML.StructuredAnnotations method)
iteritems() (aicsimageio.vendor.omexml.OMEXML.OriginalMetadata method)
K
keys() (aicsimageio.vendor.omexml.OMEXML.OriginalMetadata method)
(aicsimageio.vendor.omexml.OMEXML.StructuredAnnotations method)
L
LIF_MAGIC_BYTE (aicsimageio.readers.lif_reader.LifReader attribute)
LIF_MEMORY_BYTE (aicsimageio.readers.lif_reader.LifReader attribute)
LifReader (class in aicsimageio.readers.lif_reader)
load_slice() (aicsimageio.readers.tiff_reader.TiffReader method)
LoadResults (class in aicsimageio.types)
M
make_text_node() (in module aicsimageio.vendor.omexml)
metadata (aicsimageio.types.LoadResults attribute)
metadata() (aicsimageio.aics_image.AICSImage property)
(aicsimageio.readers.arraylike_reader.ArrayLikeReader property)
(aicsimageio.readers.czi_reader.CziReader property)
(aicsimageio.readers.default_reader.DefaultReader property)
(aicsimageio.readers.lif_reader.LifReader property)
(aicsimageio.readers.ome_tiff_reader.OmeTiffReader property)
(aicsimageio.readers.reader.Reader property)
(aicsimageio.readers.tiff_reader.TiffReader property)
MOTOROLA_ENDIAN (aicsimageio.buffer_reader.BufferReader attribute)
MPI_CMYK (in module aicsimageio.vendor.omexml)
N
Name() (aicsimageio.vendor.omexml.OMEXML.Channel property)
(aicsimageio.vendor.omexml.OMEXML.Image property)
(aicsimageio.vendor.omexml.OMEXML.Plate property)
new() (aicsimageio.vendor.omexml.OMEXML.WellSampleDucktype method)
(aicsimageio.vendor.omexml.OMEXML.WellsDucktype method)
newPlate() (aicsimageio.vendor.omexml.OMEXML.PlatesDucktype method)
O
OM_ARTIST (in module aicsimageio.vendor.omexml)
OM_BITS_PER_SAMPLE (in module aicsimageio.vendor.omexml)
OM_CELL_LENGTH (in module aicsimageio.vendor.omexml)
OM_CELL_WIDTH (in module aicsimageio.vendor.omexml)
OM_DATE_TIME (in module aicsimageio.vendor.omexml)
OM_DOCUMENT_NAME (in module aicsimageio.vendor.omexml)
OM_FILL_ORDER (in module aicsimageio.vendor.omexml)
OM_FREE_BYTECOUNTS (in module aicsimageio.vendor.omexml)
OM_FREE_OFFSETS (in module aicsimageio.vendor.omexml)
OM_GRAY_RESPONSE_CURVE (in module aicsimageio.vendor.omexml)
OM_GRAY_RESPONSE_UNIT (in module aicsimageio.vendor.omexml)
OM_HOST_COMPUTER (in module aicsimageio.vendor.omexml)
OM_IMAGE_LENGTH (in module aicsimageio.vendor.omexml)
OM_IMAGE_WIDTH (in module aicsimageio.vendor.omexml)
OM_INK_SET (in module aicsimageio.vendor.omexml)
OM_MAKE (in module aicsimageio.vendor.omexml)
OM_MAX_SAMPLE_VALUE (in module aicsimageio.vendor.omexml)
OM_MIN_SAMPLE_VALUE (in module aicsimageio.vendor.omexml)
OM_MODEL (in module aicsimageio.vendor.omexml)
OM_NEW_SUBFILE_TYPE (in module aicsimageio.vendor.omexml)
OM_ORIENTATION (in module aicsimageio.vendor.omexml)
OM_PAGE_NUMBER (in module aicsimageio.vendor.omexml)
OM_PREDICTOR (in module aicsimageio.vendor.omexml)
OM_RESOLUTION_UNIT (in module aicsimageio.vendor.omexml)
OM_SAMPLES_PER_PIXEL (in module aicsimageio.vendor.omexml)
OM_SOFTWARE (in module aicsimageio.vendor.omexml)
OM_T4_OPTIONS (in module aicsimageio.vendor.omexml)
OM_T6_OPTIONS (in module aicsimageio.vendor.omexml)
OM_THRESHHOLDING (in module aicsimageio.vendor.omexml)
OM_TILE_BYTE_COUNT (in module aicsimageio.vendor.omexml)
OM_TILE_LENGTH (in module aicsimageio.vendor.omexml)
OM_TILE_OFFSETS (in module aicsimageio.vendor.omexml)
OM_TILE_WIDTH (in module aicsimageio.vendor.omexml)
OM_TRANSFER_FUNCTION (in module aicsimageio.vendor.omexml)
OM_WHITE_POINT (in module aicsimageio.vendor.omexml)
OM_X_POSITION (in module aicsimageio.vendor.omexml)
OM_X_RESOLUTION (in module aicsimageio.vendor.omexml)
OM_Y_POSITION (in module aicsimageio.vendor.omexml)
OM_Y_RESOLUTION (in module aicsimageio.vendor.omexml)
OmeTiffReader (class in aicsimageio.readers.ome_tiff_reader)
OmeTiffWriter (class in aicsimageio.writers.ome_tiff_writer)
OMEXML (class in aicsimageio.vendor.omexml)
OMEXML.Channel (class in aicsimageio.vendor.omexml)
OMEXML.Image (class in aicsimageio.vendor.omexml)
OMEXML.OriginalMetadata (class in aicsimageio.vendor.omexml)
OMEXML.Pixels (class in aicsimageio.vendor.omexml)
OMEXML.Plane (class in aicsimageio.vendor.omexml)
OMEXML.Plate (class in aicsimageio.vendor.omexml)
OMEXML.PlatesDucktype (class in aicsimageio.vendor.omexml)
OMEXML.StructuredAnnotations (class in aicsimageio.vendor.omexml)
OMEXML.TiffData (class in aicsimageio.vendor.omexml)
OMEXML.Well (class in aicsimageio.vendor.omexml)
OMEXML.WellSample (class in aicsimageio.vendor.omexml)
OMEXML.WellSampleDucktype (class in aicsimageio.vendor.omexml)
OMEXML.WellsDucktype (class in aicsimageio.vendor.omexml)
OriginalMetadata() (aicsimageio.vendor.omexml.OMEXML.StructuredAnnotations property)
P
page_name_original_metadata() (in module aicsimageio.vendor.omexml)
PC_PLANAR (in module aicsimageio.vendor.omexml)
PhysicalSizeX() (aicsimageio.vendor.omexml.OMEXML.Pixels property)
PhysicalSizeY() (aicsimageio.vendor.omexml.OMEXML.Pixels property)
PhysicalSizeZ() (aicsimageio.vendor.omexml.OMEXML.Pixels property)
PI_CFA_ARRAY (in module aicsimageio.vendor.omexml)
Pixels() (aicsimageio.vendor.omexml.OMEXML.Image property)
PixelType() (aicsimageio.vendor.omexml.OMEXML.Pixels property)
Plane() (aicsimageio.vendor.omexml.OMEXML.Pixels method)
plane_count() (aicsimageio.vendor.omexml.OMEXML.Pixels property)
PlaneCount() (aicsimageio.vendor.omexml.OMEXML.TiffData property)
plates() (aicsimageio.vendor.omexml.OMEXML property)
PngWriter (class in aicsimageio.writers.png_writer)
populate_TiffData() (aicsimageio.vendor.omexml.OMEXML.Pixels method)
PositionX() (aicsimageio.vendor.omexml.OMEXML.Plane property)
(aicsimageio.vendor.omexml.OMEXML.WellSample property)
PositionY() (aicsimageio.vendor.omexml.OMEXML.Plane property)
(aicsimageio.vendor.omexml.OMEXML.WellSample property)
PositionZ() (aicsimageio.vendor.omexml.OMEXML.Plane property)
Q
qn() (in module aicsimageio.vendor.omexml)
R
read_bytes() (aicsimageio.buffer_reader.BufferReader method)
read_uint16() (aicsimageio.buffer_reader.BufferReader method)
read_uint32() (aicsimageio.buffer_reader.BufferReader method)
read_uint64() (aicsimageio.buffer_reader.BufferReader method)
Reader (class in aicsimageio.readers.reader)
reader() (aicsimageio.aics_image.AICSImage property)
remove_channel() (aicsimageio.vendor.omexml.OMEXML.Pixels method)
reset() (aicsimageio.buffer_reader.BufferReader method)
reshape_data() (in module aicsimageio.transforms)
root_node() (aicsimageio.vendor.omexml.OMEXML property)
Row() (aicsimageio.vendor.omexml.OMEXML.Well property)
RowNamingConvention() (aicsimageio.vendor.omexml.OMEXML.Plate property)
Rows() (aicsimageio.vendor.omexml.OMEXML.Plate property)
S
Sample() (aicsimageio.vendor.omexml.OMEXML.Well property)
SamplesPerPixel() (aicsimageio.vendor.omexml.OMEXML.Channel property)
save() (aicsimageio.writers.ome_tiff_writer.OmeTiffWriter method)
(aicsimageio.writers.png_writer.PngWriter method)
(aicsimageio.writers.writer.Writer method)
save_slice() (aicsimageio.writers.ome_tiff_writer.OmeTiffWriter method)
(aicsimageio.writers.png_writer.PngWriter method)
Scene (aicsimageio.constants.Dimensions attribute)
set_AcquisitionDate() (aicsimageio.vendor.omexml.OMEXML.Image method)
set_channel_count() (aicsimageio.vendor.omexml.OMEXML.Pixels method)
set_Color() (aicsimageio.vendor.omexml.OMEXML.Channel method)
(aicsimageio.vendor.omexml.OMEXML.Well method)
set_Column() (aicsimageio.vendor.omexml.OMEXML.Well method)
set_ColumnNamingConvention() (aicsimageio.vendor.omexml.OMEXML.Plate method)
set_Columns() (aicsimageio.vendor.omexml.OMEXML.Plate method)
set_DeltaT() (aicsimageio.vendor.omexml.OMEXML.Plane method)
set_Description() (aicsimageio.vendor.omexml.OMEXML.Plate method)
set_DimensionOrder() (aicsimageio.vendor.omexml.OMEXML.Pixels method)
set_ExternalDescription() (aicsimageio.vendor.omexml.OMEXML.Well method)
set_ExternalIdentifier() (aicsimageio.vendor.omexml.OMEXML.Plate method)
(aicsimageio.vendor.omexml.OMEXML.Well method)
set_FirstC() (aicsimageio.vendor.omexml.OMEXML.TiffData method)
set_FirstT() (aicsimageio.vendor.omexml.OMEXML.TiffData method)
set_FirstZ() (aicsimageio.vendor.omexml.OMEXML.TiffData method)
set_ID() (aicsimageio.vendor.omexml.OMEXML.Channel method)
(aicsimageio.vendor.omexml.OMEXML.Image method)
(aicsimageio.vendor.omexml.OMEXML.Pixels method)
(aicsimageio.vendor.omexml.OMEXML.Plate method)
(aicsimageio.vendor.omexml.OMEXML.Well method)
(aicsimageio.vendor.omexml.OMEXML.WellSample method)
set_IFD() (aicsimageio.vendor.omexml.OMEXML.TiffData method)
set_image_count() (aicsimageio.vendor.omexml.OMEXML method)
set_ImageRef() (aicsimageio.vendor.omexml.OMEXML.WellSample method)
set_Index() (aicsimageio.vendor.omexml.OMEXML.WellSample method)
set_metadata() (aicsimageio.writers.ome_tiff_writer.OmeTiffWriter method)
set_Name() (aicsimageio.vendor.omexml.OMEXML.Channel method)
(aicsimageio.vendor.omexml.OMEXML.Image method)
(aicsimageio.vendor.omexml.OMEXML.Plate method)
set_PhysicalSizeX() (aicsimageio.vendor.omexml.OMEXML.Pixels method)
set_PhysicalSizeY() (aicsimageio.vendor.omexml.OMEXML.Pixels method)
set_PhysicalSizeZ() (aicsimageio.vendor.omexml.OMEXML.Pixels method)
set_PixelType() (aicsimageio.vendor.omexml.OMEXML.Pixels method)
set_plane_count() (aicsimageio.vendor.omexml.OMEXML.Pixels method)
set_PlaneCount() (aicsimageio.vendor.omexml.OMEXML.TiffData method)
set_PositionX() (aicsimageio.vendor.omexml.OMEXML.Plane method)
(aicsimageio.vendor.omexml.OMEXML.WellSample method)
set_PositionY() (aicsimageio.vendor.omexml.OMEXML.Plane method)
(aicsimageio.vendor.omexml.OMEXML.WellSample method)
set_PositionZ() (aicsimageio.vendor.omexml.OMEXML.Plane method)
set_Row() (aicsimageio.vendor.omexml.OMEXML.Well method)
set_RowNamingConvention() (aicsimageio.vendor.omexml.OMEXML.Plate method)
set_Rows() (aicsimageio.vendor.omexml.OMEXML.Plate method)
set_SamplesPerPixel() (aicsimageio.vendor.omexml.OMEXML.Channel method)
set_SizeC() (aicsimageio.vendor.omexml.OMEXML.Pixels method)
set_SizeT() (aicsimageio.vendor.omexml.OMEXML.Pixels method)
set_SizeX() (aicsimageio.vendor.omexml.OMEXML.Pixels method)
set_SizeY() (aicsimageio.vendor.omexml.OMEXML.Pixels method)
set_SizeZ() (aicsimageio.vendor.omexml.OMEXML.Pixels method)
set_Status() (aicsimageio.vendor.omexml.OMEXML.Plate method)
set_text() (in module aicsimageio.vendor.omexml)
set_TheC() (aicsimageio.vendor.omexml.OMEXML.Plane method)
set_TheT() (aicsimageio.vendor.omexml.OMEXML.Plane method)
set_TheZ() (aicsimageio.vendor.omexml.OMEXML.Plane method)
set_Timepoint() (aicsimageio.vendor.omexml.OMEXML.WellSample method)
set_WellOriginX() (aicsimageio.vendor.omexml.OMEXML.Plate method)
set_WellOriginY() (aicsimageio.vendor.omexml.OMEXML.Plate method)
shape() (aicsimageio.aics_image.AICSImage property)
(aicsimageio.readers.reader.Reader property)
shutdown_cluster_and_client() (in module aicsimageio.dask_utils)
size() (aicsimageio.aics_image.AICSImage method)
(aicsimageio.readers.reader.Reader method)
size_c() (aicsimageio.aics_image.AICSImage property)
(aicsimageio.readers.czi_reader.CziReader method)
(aicsimageio.readers.lif_reader.LifReader method)
(aicsimageio.readers.ome_tiff_reader.OmeTiffReader method)
(aicsimageio.writers.ome_tiff_writer.OmeTiffWriter method)
size_s() (aicsimageio.aics_image.AICSImage property)
(aicsimageio.readers.czi_reader.CziReader method)
(aicsimageio.readers.lif_reader.LifReader method)
(aicsimageio.readers.ome_tiff_reader.OmeTiffReader method)
size_t() (aicsimageio.aics_image.AICSImage property)
(aicsimageio.readers.czi_reader.CziReader method)
(aicsimageio.readers.lif_reader.LifReader method)
(aicsimageio.readers.ome_tiff_reader.OmeTiffReader method)
(aicsimageio.writers.ome_tiff_writer.OmeTiffWriter method)
size_x() (aicsimageio.aics_image.AICSImage property)
(aicsimageio.readers.czi_reader.CziReader method)
(aicsimageio.readers.lif_reader.LifReader method)
(aicsimageio.readers.ome_tiff_reader.OmeTiffReader method)
(aicsimageio.writers.ome_tiff_writer.OmeTiffWriter method)
size_y() (aicsimageio.aics_image.AICSImage property)
(aicsimageio.readers.czi_reader.CziReader method)
(aicsimageio.readers.lif_reader.LifReader method)
(aicsimageio.readers.ome_tiff_reader.OmeTiffReader method)
(aicsimageio.writers.ome_tiff_writer.OmeTiffWriter method)
size_z() (aicsimageio.aics_image.AICSImage property)
(aicsimageio.readers.czi_reader.CziReader method)
(aicsimageio.readers.lif_reader.LifReader method)
(aicsimageio.readers.ome_tiff_reader.OmeTiffReader method)
(aicsimageio.writers.ome_tiff_writer.OmeTiffWriter method)
SizeC() (aicsimageio.vendor.omexml.OMEXML.Pixels property)
SizeT() (aicsimageio.vendor.omexml.OMEXML.Pixels property)
SizeX() (aicsimageio.vendor.omexml.OMEXML.Pixels property)
SizeY() (aicsimageio.vendor.omexml.OMEXML.Pixels property)
SizeZ() (aicsimageio.vendor.omexml.OMEXML.Pixels property)
SpatialX (aicsimageio.constants.Dimensions attribute)
SpatialY (aicsimageio.constants.Dimensions attribute)
SpatialZ (aicsimageio.constants.Dimensions attribute)
spawn_cluster_and_client() (in module aicsimageio.dask_utils)
split_qn() (in module aicsimageio.vendor.omexml)
Status() (aicsimageio.vendor.omexml.OMEXML.Plate property)
structured_annotations() (aicsimageio.vendor.omexml.OMEXML property)
T
TheC() (aicsimageio.vendor.omexml.OMEXML.Plane property)
TheT() (aicsimageio.vendor.omexml.OMEXML.Plane property)
TheZ() (aicsimageio.vendor.omexml.OMEXML.Plane property)
TiffData() (aicsimageio.vendor.omexml.OMEXML.Pixels method)
TiffReader (class in aicsimageio.readers.tiff_reader)
Time (aicsimageio.constants.Dimensions attribute)
Timepoint() (aicsimageio.vendor.omexml.OMEXML.WellSample property)
to_xml() (aicsimageio.vendor.omexml.OMEXML method)
transpose_to_dims() (in module aicsimageio.transforms)
U
UnsupportedFileFormatError
use_dask() (in module aicsimageio.readers.reader)
V
view_napari() (aicsimageio.aics_image.AICSImage method)
W
Well() (aicsimageio.vendor.omexml.OMEXML.Plate property)
WellOriginX() (aicsimageio.vendor.omexml.OMEXML.Plate property)
WellOriginY() (aicsimageio.vendor.omexml.OMEXML.Plate property)
Writer (class in aicsimageio.writers.writer)
X
xsd_now() (in module aicsimageio.vendor.omexml)
Z
ZEISS_10BYTE (aicsimageio.readers.czi_reader.CziReader attribute)
ZEISS_2BYTE (aicsimageio.readers.czi_reader.CziReader attribute)