Changelog

(unreleased)

Fix

  • Fix doc build by pinning jinja2 [JacksonMaxfield]

Other

  • admin/v3-m2r-to-m2r2-docs-build-fix (#374) [Jackson Maxfield Brown]

v3.3.7 (2021-05-31)

Fix

  • bugfix/fiff-tiff-no-description-offset (#245) [Mustafa Al Ibrahim]

v3.3.6 (2021-05-24)

  • admin/pin-imagecodecs (#237) [Sylvain Slaton]

  • admin/prep-for-v4-release (#232) [Jackson Maxfield Brown]

v3.3.5 (2021-01-25)

Fix

  • bugfix/pin-readlif (#187) [Jackson Maxfield Brown]

v3.3.4 (2021-01-13)

  • ome-xml as string to ome tiff writer (#180) [toloudis]

v3.3.3 (2020-12-14)

Fix

  • bugfix/replace-napari-is-pyramid-with-multiscale (#172) [Dimitri Hürlimann, dimi-huer]

Other

  • admin/support-py39 (#169) [Jackson Maxfield Brown]

v3.3.2 (2020-11-17)

  • admin/update-base-reader-dep-versions (#156) [Jamie Sherman]

v3.3.1 (2020-09-23)

Fix

  • bugfix/tiff-rgb (#153) [Jamie Sherman]

Other

  • admin/cleanup-readme (#149) [Jackson Maxfield Brown]

v3.3.0 (2020-09-09)

New

  • feature/use-in-memory-data-for-non-dask-calls (#148) [Jackson Maxfield Brown]

v3.2.3 (2020-06-23)

New

  • feature/reader-additions (#126) [JacksonMaxfield]

v3.2.2 (2020-06-11)

New

  • feature/enable-disable-dask (#124) [JacksonMaxfield]

Other

  • admin/update-build-tooling (#123) [JacksonMaxfield]

  • admin/switch-log-warning-to-warnings-warn (#122) [JacksonMaxfield]

v3.2.1 (2020-05-26)

Fix

  • bugfix/add-imagecodecs-dep (#120) [JacksonMaxfield]

v3.2.0 (2020-05-13)

New

  • feature/optimize-readers (#113) [JacksonMaxfield]

  • feature/allow-sequence-in-get-data (#109) [JacksonMaxfield]

  • feature/read-leica-lif-files (#99) [Jamie Sherman]

Fix

  • bugfix/update-ome-spec (#116) [JacksonMaxfield]

  • bugfix/set-sphinx-dep-upper-bound (#95) [JacksonMaxfield]

Other

  • admin/benchmarks (#112) [JacksonMaxfield]

  • admin/use-black-formatting (#108) [JacksonMaxfield]

  • Update PR Template [Madison Bowden]

  • admin/move-test-resources-to-s3 (#94) [JacksonMaxfield]

v3.1.4 (2020-03-21)

New

  • feature/add-get-channel-names-to-base-reader (#88) [JacksonMaxfield]

Fix

  • bugfix/reader-context-manager-top-level-import-error (#85) [JacksonMaxfield]

v3.1.3 (2020-03-11)

Fix

  • bugfix/delay-import-of-distributed-module (#83) [JacksonMaxfield]

Other

  • admin/standardize-flake8-settings (#84) [JacksonMaxfield]

v3.1.2 (2020-03-06)

New

  • feature/get-physical-pixel-size (#80) [JacksonMaxfield]

Other

  • admin/add-back-codecov (#81) [JacksonMaxfield]

  • admin/changelog-link-to-prs (#77) [JacksonMaxfield]

v3.1.1 (2020-02-21)

Fix

  • bugfix/make-aicsimage-serializable (#74) [JacksonMaxfield]

  • bugfix/return-none-cluster (#73) [Jamie Sherman]

Other

  • admin/auto-changelog (#75) [JacksonMaxfield]

  • admin/test-py38 (#76) [JacksonMaxfield]

v3.1.0 (2020-02-03)

New

  • feature/use-dask (#63) [JacksonMaxfield]

Fix

  • Fix pypi publish action [Jackson Brown]

  • bugfix/auto-doc-gen (#70) [JacksonMaxfield]

v3.0.7 (2019-11-05)

  • Remove make clean command from make docs call (#49) [JacksonMaxfield]

  • populate_tiffdata should respect dimension order (#48) [toloudis]

v3.0.6 (2019-10-31)

New

  • Feature/physical pixel size (#43) [toloudis]

Fix

  • fix imread bug and allow AICSImage class to close its reader (#44) [toloudis]

v3.0.5 (2019-10-30)

  • clean up from PR comments [Daniel Toloudis]

  • add get_channel_names to AICSImage class [Daniel Toloudis]

v3.0.4 (2019-10-28)

  • add size getters to the AICSImage class (#38) [toloudis]

v3.0.3 (2019-10-25)

Fix

  • fix linting [Daniel Toloudis]

  • fix png writer and tests [Daniel Toloudis]

  • fix linter [Daniel Toloudis]

  • fix png writer and tests [Daniel Toloudis]

Other

  • Remove patch coverage check (#36) [JacksonMaxfield]

  • pull request code review revisions [Dan Toloudis]

  • Revert “fix png writer and tests” [Daniel Toloudis]

  • use old default for dimension_order so that existing code does not break [Daniel Toloudis]

  • add a unit test for dimension_order and refactor test_ome_tiff_writer [Daniel Toloudis]

  • allow dimension order in ome-tiff writer [Daniel Toloudis]

  • remove accidentally added file [Daniel Toloudis]

  • Remove CRON from doc build workflow [Jackson Brown]

  • Remove double builds from github actions [Jackson Brown]

  • Wrap CRON string in quotes [Jackson Brown]

  • Update CRON strings [Jackson Brown]

  • Do not build documentation for tests module [Jackson Brown]

  • Update makefile to remove all generated rst’s on doc gen [Jackson Brown]

  • Update czireader import so that it doesn’t fail on etree [Jackson Brown]

  • Move documentation badge to before codecov [JacksonMaxfield]

  • Update readme to have doc badge [JacksonMaxfield]

  • Add doc generation workflow [JacksonMaxfield]

  • Add required documentation files and update requirements [JacksonMaxfield]

  • Update task version pins to point at master / latest [JacksonMaxfield]

v3.0.2 (2019-10-11)

  • Pull in feedback from team [Jackson Brown]

  • Update README to include known_dim functionality [Jackson Brown]

  • Add test for invalid dim names [Jackson Brown]

  • Resolves [gh-22], allow passing of known dim order to AICSImage [Jackson Brown]

  • Resolves [gh-23], use OME-Tiff metadata to parse dim sizes and order [Jackson Brown]

v3.0.1 (2019-10-04)

  • Label Quickstart code block as python [Jackson Brown]

  • Update setup.cfg to properly bumpversion [Jackson Brown]

  • Rename build workflow to build master [Jackson Brown]

  • Update to new cookiecutter gh templates after matts feedback [Jackson Brown]

  • Remove cov report html from actions as not needed on remote [Jackson Brown]

  • Add PR to test and lint action triggers [Jackson Brown]

  • Remove references to quilt3distribute that were copied over [Jackson Brown]

  • Update CI/CD, README badge, local developement, and contributing docs [Jackson Brown]

  • CODE_OF_CONDUCT.md [Jamie Sherman]