Changelog ========= (unreleased) ------------ Fix ~~~ - Fix doc build by pinning jinja2 [JacksonMaxfield] Other ~~~~~ - admin/v3-m2r-to-m2r2-docs-build-fix (`#374 `_) [Jackson Maxfield Brown] v3.3.7 (2021-05-31) ------------------- Fix ~~~ - bugfix/fiff-tiff-no-description-offset (`#245 `_) [Mustafa Al Ibrahim] v3.3.6 (2021-05-24) ------------------- - admin/pin-imagecodecs (`#237 `_) [Sylvain Slaton] - admin/prep-for-v4-release (`#232 `_) [Jackson Maxfield Brown] v3.3.5 (2021-01-25) ------------------- Fix ~~~ - bugfix/pin-readlif (`#187 `_) [Jackson Maxfield Brown] v3.3.4 (2021-01-13) ------------------- - ome-xml as string to ome tiff writer (`#180 `_) [toloudis] v3.3.3 (2020-12-14) ------------------- Fix ~~~ - bugfix/replace-napari-is-pyramid-with-multiscale (`#172 `_) [Dimitri Hürlimann, dimi-huer] Other ~~~~~ - admin/support-py39 (`#169 `_) [Jackson Maxfield Brown] v3.3.2 (2020-11-17) ------------------- - admin/update-base-reader-dep-versions (`#156 `_) [Jamie Sherman] v3.3.1 (2020-09-23) ------------------- Fix ~~~ - bugfix/tiff-rgb (`#153 `_) [Jamie Sherman] Other ~~~~~ - admin/cleanup-readme (`#149 `_) [Jackson Maxfield Brown] v3.3.0 (2020-09-09) ------------------- New ~~~ - feature/use-in-memory-data-for-non-dask-calls (`#148 `_) [Jackson Maxfield Brown] v3.2.3 (2020-06-23) ------------------- New ~~~ - feature/reader-additions (`#126 `_) [JacksonMaxfield] v3.2.2 (2020-06-11) ------------------- New ~~~ - feature/enable-disable-dask (`#124 `_) [JacksonMaxfield] Other ~~~~~ - admin/update-build-tooling (`#123 `_) [JacksonMaxfield] - admin/switch-log-warning-to-warnings-warn (`#122 `_) [JacksonMaxfield] v3.2.1 (2020-05-26) ------------------- Fix ~~~ - bugfix/add-imagecodecs-dep (`#120 `_) [JacksonMaxfield] v3.2.0 (2020-05-13) ------------------- New ~~~ - feature/optimize-readers (`#113 `_) [JacksonMaxfield] - feature/allow-sequence-in-get-data (`#109 `_) [JacksonMaxfield] - feature/read-leica-lif-files (`#99 `_) [Jamie Sherman] Fix ~~~ - bugfix/update-ome-spec (`#116 `_) [JacksonMaxfield] - bugfix/set-sphinx-dep-upper-bound (`#95 `_) [JacksonMaxfield] Other ~~~~~ - admin/benchmarks (`#112 `_) [JacksonMaxfield] - admin/use-black-formatting (`#108 `_) [JacksonMaxfield] - Update PR Template [Madison Bowden] - admin/move-test-resources-to-s3 (`#94 `_) [JacksonMaxfield] v3.1.4 (2020-03-21) ------------------- New ~~~ - feature/add-get-channel-names-to-base-reader (`#88 `_) [JacksonMaxfield] Fix ~~~ - bugfix/reader-context-manager-top-level-import-error (`#85 `_) [JacksonMaxfield] v3.1.3 (2020-03-11) ------------------- Fix ~~~ - bugfix/delay-import-of-distributed-module (`#83 `_) [JacksonMaxfield] Other ~~~~~ - admin/standardize-flake8-settings (`#84 `_) [JacksonMaxfield] v3.1.2 (2020-03-06) ------------------- New ~~~ - feature/get-physical-pixel-size (`#80 `_) [JacksonMaxfield] Other ~~~~~ - admin/add-back-codecov (`#81 `_) [JacksonMaxfield] - admin/changelog-link-to-prs (`#77 `_) [JacksonMaxfield] v3.1.1 (2020-02-21) ------------------- Fix ~~~ - bugfix/make-aicsimage-serializable (`#74 `_) [JacksonMaxfield] - bugfix/return-none-cluster (`#73 `_) [Jamie Sherman] Other ~~~~~ - admin/auto-changelog (`#75 `_) [JacksonMaxfield] - admin/test-py38 (`#76 `_) [JacksonMaxfield] v3.1.0 (2020-02-03) ------------------- New ~~~ - feature/use-dask (`#63 `_) [JacksonMaxfield] Fix ~~~ - Fix pypi publish action [Jackson Brown] - bugfix/auto-doc-gen (`#70 `_) [JacksonMaxfield] v3.0.7 (2019-11-05) ------------------- - Remove make clean command from make docs call (`#49 `_) [JacksonMaxfield] - populate_tiffdata should respect dimension order (`#48 `_) [toloudis] v3.0.6 (2019-10-31) ------------------- New ~~~ - Feature/physical pixel size (`#43 `_) [toloudis] Fix ~~~ - fix imread bug and allow AICSImage class to close its reader (`#44 `_) [toloudis] v3.0.5 (2019-10-30) ------------------- - clean up from PR comments [Daniel Toloudis] - add get_channel_names to AICSImage class [Daniel Toloudis] v3.0.4 (2019-10-28) ------------------- - add size getters to the AICSImage class (`#38 `_) [toloudis] v3.0.3 (2019-10-25) ------------------- Fix ~~~ - fix linting [Daniel Toloudis] - fix png writer and tests [Daniel Toloudis] - fix linter [Daniel Toloudis] - fix png writer and tests [Daniel Toloudis] Other ~~~~~ - Remove patch coverage check (`#36 `_) [JacksonMaxfield] - pull request code review revisions [Dan Toloudis] - Revert "fix png writer and tests" [Daniel Toloudis] - use old default for dimension_order so that existing code does not break [Daniel Toloudis] - add a unit test for dimension_order and refactor test_ome_tiff_writer [Daniel Toloudis] - allow dimension order in ome-tiff writer [Daniel Toloudis] - remove accidentally added file [Daniel Toloudis] - Remove CRON from doc build workflow [Jackson Brown] - Remove double builds from github actions [Jackson Brown] - Wrap CRON string in quotes [Jackson Brown] - Update CRON strings [Jackson Brown] - Do not build documentation for tests module [Jackson Brown] - Update makefile to remove all generated rst's on doc gen [Jackson Brown] - Update czireader import so that it doesn't fail on etree [Jackson Brown] - Move documentation badge to before codecov [JacksonMaxfield] - Update readme to have doc badge [JacksonMaxfield] - Add doc generation workflow [JacksonMaxfield] - Add required documentation files and update requirements [JacksonMaxfield] - Update task version pins to point at master / latest [JacksonMaxfield] v3.0.2 (2019-10-11) ------------------- - Pull in feedback from team [Jackson Brown] - Update README to include known_dim functionality [Jackson Brown] - Add test for invalid dim names [Jackson Brown] - Resolves [gh-22], allow passing of known dim order to AICSImage [Jackson Brown] - Resolves [gh-23], use OME-Tiff metadata to parse dim sizes and order [Jackson Brown] v3.0.1 (2019-10-04) ------------------- - Label Quickstart code block as python [Jackson Brown] - Update setup.cfg to properly bumpversion [Jackson Brown] - Rename build workflow to build master [Jackson Brown] - Update to new cookiecutter gh templates after matts feedback [Jackson Brown] - Remove cov report html from actions as not needed on remote [Jackson Brown] - Add PR to test and lint action triggers [Jackson Brown] - Remove references to quilt3distribute that were copied over [Jackson Brown] - Update CI/CD, README badge, local developement, and contributing docs [Jackson Brown] - CODE_OF_CONDUCT.md [Jamie Sherman]