Index

A

Actin (class in flins.proteins.actin) ActininHead (class in flins.proteins.alpha_actinin) add_mol() (flins.space.tract.Tract method) add_svg() (flins.visualize.movie.MovieGen method) add_world() (flins.visualize.movie.MovieGen method) all_entries() (flins.space.grids.Grid property) (flins.space.grids.HexGrid property) (flins.space.grids.RectGrid property)

all_tracts() (flins.space.space.Space property) AlphaActinin (class in flins.proteins.alpha_actinin) Anchor (class in flins.proteins.anchor) avogadro (flins.support.units.constants attribute)

B

Base (class in flins.base) bind() (flins.support.binding_site.BindingSite method) BindingSite (class in flins.support.binding_site) boltzmann (flins.support.units.constants attribute) bop_dx() (flins.support.spring.Spring method) bop_length() (flins.support.spring.Spring method)

bopped_locs() (flins.proteins.motor.Motor property) bound() (flins.proteins.actin.Actin property) (flins.proteins.alpha_actinin.AlphaActinin property) (flins.proteins.motor.Motor property) (flins.support.binding_site.BindingSite property) boundaries() (flins.proteins.actin.Actin property)

C

clean_up() (flins.visualize.movie.MovieGen method) closest() (in module flins.support.hexmath.cube)

coerce_to_bounds() (in module flins.support.diffuse) constants (class in flins.support.units) create_test_world() (in module flins.construct.test)

D

D_cyto_corr (flins.support.units.world attribute) display() (in module flins.visualize.svg) distance() (flins.space.grids.Grid method) (flins.space.grids.HexGrid method) (flins.space.grids.RectGrid method) (in module flins.support.hexmath.cube)

Drag (class in flins.support.diffuse) Drag.Cylinder (class in flins.support.diffuse) Drag.Ellipsoid (class in flins.support.diffuse) Drag.Sphere (class in flins.support.diffuse) Dx() (in module flins.support.diffuse)

E

energy() (flins.proteins.actin.Actin property) (flins.proteins.actin.GActinPair method) (flins.proteins.alpha_actinin.ActininHead method) (flins.proteins.alpha_actinin.AlphaActinin property) (flins.proteins.anchor.Anchor method) (flins.proteins.motor.MotorHead method) (flins.support.spring.Spring method)

entry() (flins.space.grids.Grid method) (flins.space.grids.HexGrid method) (flins.space.grids.RectGrid method) eta (flins.support.units.constants attribute)

F

flins (module) flins.base (module) flins.construct (module) flins.construct.locations (module) flins.construct.test (module) flins.construct.world (module) flins.proteins (module) flins.proteins.actin (module) flins.proteins.alpha_actinin (module) flins.proteins.anchor (module) flins.proteins.base (module) flins.proteins.motor (module) flins.space (module) flins.space.grids (module) flins.space.space (module) flins.space.tract (module) flins.support (module) flins.support.binding_site (module) flins.support.diffuse (module) flins.support.hexmath (module) flins.support.hexmath.axial (module)

flins.support.hexmath.cube (module) flins.support.hexmath.offset (module) flins.support.kinetics (module) flins.support.names (module) flins.support.spring (module) flins.support.units (module) flins.visualize (module) flins.visualize.flat_render (module) flins.visualize.movie (module) flins.visualize.svg (module) flins.visualize.vis_actin (module) flins.visualize.vis_space (module) force() (flins.proteins.actin.Actin property) (flins.proteins.actin.GActinPair method) (flins.proteins.alpha_actinin.ActininHead method) (flins.proteins.anchor.Anchor method) (flins.proteins.motor.MotorHead method) (flins.support.spring.Spring method) freely_diffuse() (flins.proteins.actin.Actin method) (flins.proteins.alpha_actinin.AlphaActinin method) fully_bound() (flins.proteins.alpha_actinin.AlphaActinin property) (flins.proteins.motor.Motor property)

G

GActinPair (class in flins.proteins.actin)

Grid (class in flins.space.grids)

H

Head (class in flins.proteins.base)

HexGrid (class in flins.space.grids)

J

joules() (in module flins.support.units)

jupyter() (in module flins.visualize.svg)

K

k() (flins.support.spring.Spring property)

kcal() (in module flins.support.units) kT (flins.support.units.constants attribute)

L

length() (flins.proteins.actin.Actin property) linked() (flins.support.binding_site.BindingSite property) location_end_cut() (in module flins.construct.locations) location_end_pushed() (in module flins.construct.locations)

locs() (flins.proteins.motor.Motor property) long_axis_rotation() (flins.support.diffuse.Drag.Cylinder method) (flins.support.diffuse.Drag.Ellipsoid method) long_axis_translation() (flins.support.diffuse.Drag.Cylinder method) (flins.support.diffuse.Drag.Ellipsoid method)

M

milliseconds() (in module flins.support.units) mirror() (flins.space.grids.Grid method) (flins.space.grids.HexGrid method) (flins.space.grids.RectGrid method)

Motor (class in flins.proteins.motor) MotorHead (class in flins.proteins.motor) MovieGen (class in flins.visualize.movie)

N

name_to_uuid() (in module flins.support.names) nearest() (flins.proteins.actin.Actin method) nearest_binding_site() (flins.space.tract.Tract method) nearest_unbound() (flins.proteins.actin.Actin method) neighbors() (flins.space.grids.Grid method) (flins.space.grids.HexGrid method) (flins.space.grids.RectGrid method) (flins.space.space.Space method) (flins.space.tract.Tract property) (in module flins.support.hexmath.cube)

normal_length_distribution() (in module flins.construct.locations)

O

other_head() (flins.proteins.base.Head property)

P

plot_actin() (in module flins.visualize.vis_actin) plot_tractspace() (in module flins.visualize.vis_space) plot_world() (in module flins.visualize.flat_render)

poise() (in module flins.support.units) polarity() (flins.proteins.actin.GActinPair property) (flins.proteins.motor.MotorHead property) Protein (class in flins.proteins.base)

R

rate_to_prob() (in module flins.support.kinetics) reachable() (flins.space.tract.Tract property) RectGrid (class in flins.space.grids)

reverse_rate() (in module flins.support.kinetics) rotate_about_center() (in module flins.support.hexmath.cube) rotation() (flins.support.diffuse.Drag.Sphere method)

S

save() (in module flins.visualize.svg) short_axis_rotation() (flins.support.diffuse.Drag.Cylinder method) (flins.support.diffuse.Drag.Ellipsoid method) short_axis_translation() (flins.support.diffuse.Drag.Cylinder method) (flins.support.diffuse.Drag.Ellipsoid method) show() (flins.visualize.movie.MovieGen method) Space (class in flins.space.space) Spring (class in flins.support.spring)

state() (flins.proteins.motor.Motor property) step() (flins.construct.world.World method) (flins.proteins.actin.Actin method) (flins.proteins.alpha_actinin.ActininHead method) (flins.proteins.alpha_actinin.AlphaActinin method) (flins.proteins.anchor.Anchor method) (flins.proteins.motor.Motor method) (flins.proteins.motor.MotorHead method)

T

temperature (flins.support.units.constants attribute) timestep (flins.support.units.world attribute) to_array_indices() (flins.space.grids.HexGrid method) (flins.space.grids.RectGrid static method) to_axial() (in module flins.support.hexmath.cube) to_cart() (in module flins.support.hexmath.axial) (in module flins.support.hexmath.cube) (in module flins.support.hexmath.offset)

to_cube() (in module flins.support.hexmath.axial) (in module flins.support.hexmath.offset) to_offset() (in module flins.support.hexmath.cube) Tract (class in flins.space.tract) tract() (flins.space.space.Space method) translation() (flins.support.diffuse.Drag.Sphere method)

U

unbind() (flins.support.binding_site.BindingSite method)

unique_name() (in module flins.support.names)

V

validate() (flins.space.grids.Grid method) (flins.space.grids.HexGrid method) (flins.space.grids.RectGrid method) (in module flins.support.hexmath.cube)

W

within() (flins.space.grids.Grid method) (flins.space.grids.HexGrid method) (flins.space.grids.RectGrid method)

within_radius() (in module flins.support.hexmath.cube) World (class in flins.construct.world) world (class in flins.support.units) write_movie() (flins.visualize.movie.MovieGen method)

X

x() (flins.proteins.actin.Actin property) (flins.proteins.actin.GActinPair property) (flins.proteins.alpha_actinin.ActininHead property) (flins.proteins.motor.Motor property) (flins.proteins.motor.MotorHead property)