elastic_net_gene_selection.solvers package

Submodules

elastic_net_gene_selection.solvers.linear module

elastic_net_gene_selection.solvers.linear.parallel_runs(adata, n_processes=10, n_bootstraps=1000, X_noise=0.01, y_noise=0.5, alpha=0.9, lambda_path=array([10., 4.64158883, 2.15443469, 1., 0.46415888, 0.21544347, 0.1, 0.04641589, 0.02154435, 0.01 ]), target_col='day', target_map={'0': 0, '1': 1, '2': 2})

elastic_net_gene_selection.solvers.linear.worker(boot_inds, X, y, X_noise=0.01, y_noise=0.5, alpha=0.9, lambda_path=array([1., 0.95454846, 0.91116276, 0.869749, 0.83021757, 0.7924829, 0.75646333, 0.7220809, 0.68926121, 0.65793322, 0.62802914, 0.59948425, 0.57223677, 0.54622772, 0.52140083, 0.49770236, 0.47508102, 0.45348785, 0.43287613, 0.41320124, 0.39442061, 0.37649358, 0.35938137, 0.34304693, 0.32745492, 0.31257158, 0.29836472, 0.28480359, 0.27185882, 0.25950242, 0.24770764, 0.23644894, 0.22570197, 0.21544347, 0.20565123, 0.19630407, 0.18738174, 0.17886495, 0.17073526, 0.16297508, 0.15556761, 0.14849683, 0.14174742, 0.13530478, 0.12915497, 0.12328467, 0.1176812, 0.1123324, 0.10722672, 0.1023531, 0.097701, 0.09326033, 0.08902151, 0.08497534, 0.08111308, 0.07742637, 0.07390722, 0.07054802, 0.06734151, 0.06428073, 0.06135907, 0.05857021, 0.0559081, 0.05336699, 0.05094138, 0.04862602, 0.04641589, 0.04430621, 0.04229243, 0.04037017, 0.03853529, 0.0367838, 0.03511192, 0.03351603, 0.03199267, 0.03053856, 0.02915053, 0.02782559, 0.02656088, 0.02535364, 0.02420128, 0.0231013, 0.02205131, 0.02104904, 0.02009233, 0.0191791, 0.01830738, 0.01747528, 0.01668101, 0.01592283, 0.01519911, 0.01450829, 0.01384886, 0.01321941, 0.01261857, 0.01204504, 0.01149757, 0.01097499, 0.01047616, 0.01 ]))

elastic_net_gene_selection.solvers.logistic module

elastic_net_gene_selection.solvers.logistic.parallel_runs(adata, n_processes=10, n_bootstraps=1000, X_noise=0.01, alpha=0.9, lambda_path=array([1.00000000e-03, 9.32603347e-04, 8.69749003e-04, 8.11130831e-04, 7.56463328e-04, 7.05480231e-04, 6.57933225e-04, 6.13590727e-04, 5.72236766e-04, 5.33669923e-04, 4.97702356e-04, 4.64158883e-04, 4.32876128e-04, 4.03701726e-04, 3.76493581e-04, 3.51119173e-04, 3.27454916e-04, 3.05385551e-04, 2.84803587e-04, 2.65608778e-04, 2.47707636e-04, 2.31012970e-04, 2.15443469e-04, 2.00923300e-04, 1.87381742e-04, 1.74752840e-04, 1.62975083e-04, 1.51991108e-04, 1.41747416e-04, 1.32194115e-04, 1.23284674e-04, 1.14975700e-04, 1.07226722e-04, 1.00000000e-04, 9.32603347e-05, 8.69749003e-05, 8.11130831e-05, 7.56463328e-05, 7.05480231e-05, 6.57933225e-05, 6.13590727e-05, 5.72236766e-05, 5.33669923e-05, 4.97702356e-05, 4.64158883e-05, 4.32876128e-05, 4.03701726e-05, 3.76493581e-05, 3.51119173e-05, 3.27454916e-05, 3.05385551e-05, 2.84803587e-05, 2.65608778e-05, 2.47707636e-05, 2.31012970e-05, 2.15443469e-05, 2.00923300e-05, 1.87381742e-05, 1.74752840e-05, 1.62975083e-05, 1.51991108e-05, 1.41747416e-05, 1.32194115e-05, 1.23284674e-05, 1.14975700e-05, 1.07226722e-05, 1.00000000e-05, 9.32603347e-06, 8.69749003e-06, 8.11130831e-06, 7.56463328e-06, 7.05480231e-06, 6.57933225e-06, 6.13590727e-06, 5.72236766e-06, 5.33669923e-06, 4.97702356e-06, 4.64158883e-06, 4.32876128e-06, 4.03701726e-06, 3.76493581e-06, 3.51119173e-06, 3.27454916e-06, 3.05385551e-06, 2.84803587e-06, 2.65608778e-06, 2.47707636e-06, 2.31012970e-06, 2.15443469e-06, 2.00923300e-06, 1.87381742e-06, 1.74752840e-06, 1.62975083e-06, 1.51991108e-06, 1.41747416e-06, 1.32194115e-06, 1.23284674e-06, 1.14975700e-06, 1.07226722e-06, 1.00000000e-06]), target_col='timepoint_coarse')

elastic_net_gene_selection.solvers.logistic.worker(boot_inds, X, y, X_noise=0.01, alpha=0.9, lambda_path=array([1.00000000e-03, 9.32603347e-04, 8.69749003e-04, 8.11130831e-04, 7.56463328e-04, 7.05480231e-04, 6.57933225e-04, 6.13590727e-04, 5.72236766e-04, 5.33669923e-04, 4.97702356e-04, 4.64158883e-04, 4.32876128e-04, 4.03701726e-04, 3.76493581e-04, 3.51119173e-04, 3.27454916e-04, 3.05385551e-04, 2.84803587e-04, 2.65608778e-04, 2.47707636e-04, 2.31012970e-04, 2.15443469e-04, 2.00923300e-04, 1.87381742e-04, 1.74752840e-04, 1.62975083e-04, 1.51991108e-04, 1.41747416e-04, 1.32194115e-04, 1.23284674e-04, 1.14975700e-04, 1.07226722e-04, 1.00000000e-04, 9.32603347e-05, 8.69749003e-05, 8.11130831e-05, 7.56463328e-05, 7.05480231e-05, 6.57933225e-05, 6.13590727e-05, 5.72236766e-05, 5.33669923e-05, 4.97702356e-05, 4.64158883e-05, 4.32876128e-05, 4.03701726e-05, 3.76493581e-05, 3.51119173e-05, 3.27454916e-05, 3.05385551e-05, 2.84803587e-05, 2.65608778e-05, 2.47707636e-05, 2.31012970e-05, 2.15443469e-05, 2.00923300e-05, 1.87381742e-05, 1.74752840e-05, 1.62975083e-05, 1.51991108e-05, 1.41747416e-05, 1.32194115e-05, 1.23284674e-05, 1.14975700e-05, 1.07226722e-05, 1.00000000e-05, 9.32603347e-06, 8.69749003e-06, 8.11130831e-06, 7.56463328e-06, 7.05480231e-06, 6.57933225e-06, 6.13590727e-06, 5.72236766e-06, 5.33669923e-06, 4.97702356e-06, 4.64158883e-06, 4.32876128e-06, 4.03701726e-06, 3.76493581e-06, 3.51119173e-06, 3.27454916e-06, 3.05385551e-06, 2.84803587e-06, 2.65608778e-06, 2.47707636e-06, 2.31012970e-06, 2.15443469e-06, 2.00923300e-06, 1.87381742e-06, 1.74752840e-06, 1.62975083e-06, 1.51991108e-06, 1.41747416e-06, 1.32194115e-06, 1.23284674e-06, 1.14975700e-06, 1.07226722e-06, 1.00000000e-06]))

Module contents

Solvers package for elastic_net_gene_selection.