AICS Modeling

Brief, sometimes rough, data stories and tutorials from the modeling group at the Allen Institute for Cell Science

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2018-05-03: Fluorescence Images without Fluorescent Markers

Using brightfield microscopy images to generate fluorescence marked images.

2018-03-21: Automating Access to Cell Images and Other Data

Native python download and usage of Allen Institute for Cell Science imaging and other data with Quilt.

2018-02-23: What shapes are our iPSCs?

A quick PCA of our cell and nuclear outlines.

2017-10-28: Monte Carlo Integration

Working out a variation metric for the IC using monte carlo integration of a toy problem